export.gsea.gct.topTable: Export a GCT file, from a GSEA topTable plus data table

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

This is a companion function to export.gsea.rnk.topTable which makes a gct file which can then be used for annotating GSEA output with heatmaps.

Usage

export.gsea.gct.topTable(tt, rma, chip, file, missing = "", verbose = TRUE,
  ...)

Arguments

tt	a GSEA top-table at the probe-level
rma	a data.frame of expression data with rownames being the probesetID
chip	the chip file that will be used in the gseaPreRanked analysis. Either the path to the file name, or the imported version as a data.frame. see import.gsea.chip
file	the fully specified path for the gct file
missing	how would you like
verbose	logical: print messages?
...	further arguments passed to export.gsea.gct

Author(s)

Mark Cowley, 2009-08-13

See Also

export.gsea.gct

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.