Files in drmjc/metaGSEA
Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

DESCRIPTION

NAMESPACE

R/GSEAhyperGTest.R R/average.replicates.gct.R R/catplot.GSEA.R R/chip2description.R R/collapse.gct.R R/collapse.gct2genesets.R R/convert.gct2submap.R R/convert.gsea.res2gct.R R/dist.gsea.R R/export.broad.cls.R R/export.broad.res.R R/export.gsea.R R/export.gsea.cdt.R R/export.gsea.chip.R R/export.gsea.edb.R R/export.gsea.gct.R R/export.gsea.gct.topTable.R R/export.gsea.gmt.R R/export.gsea.leadingedge.analysis.R R/export.gsea.odf.R R/export.gsea.odf.lmFit.R R/export.gsea.rnk.R R/export.gsea.rnk.topTable.R R/export.gsea.rpt.R R/genepattern.HeatMapImage.R R/genepattern2spd.R R/gsea.combine.R R/gsea.compare.runs.R R/gsea.compare.runs.filter.R R/gsea.compare.runs.sort.R R/gsea.convert.clm2cls.R R/gsea.filter.R R/gsea.fix.output.R R/gsea.gct.probes2genes.R R/gsea.gct.select.feature.columns.R R/gsea.gct.select.features.rows.R R/gsea.genesets2gct.R R/gsea.hardwire.rpt.paths.R R/gsea.length.R R/gsea.merge.R R/gsea.merge.dirs.R R/gsea.merge.tt.R R/gsea.rename.genesets.R R/gsea.reorder.gmt.by.rnk.R R/gsea.split.R R/gsea.summarise.R R/gsea.which.gmt.R R/gsealist.find.genesets.R R/gsealist2adjmat.R R/gsealist2genesetlist.R R/import.genepattern.odf.R R/import.gsea.R R/import.gsea.chip.R R/import.gsea.clm.R R/import.gsea.cls.R R/import.gsea.compare.runs.R R/import.gsea.edb.R R/import.gsea.gct.R R/import.gsea.gmt.R R/import.gsea.gmx.R R/import.gsea.leadingedge.R R/import.gsea.res.R R/import.gsea.rnk.R R/import.gsea.rpt.R R/import.gsea.topTable.R R/is.gsea.R R/is.gsea.dir.R R/is.gsea.res.R R/is.gsea.zip.R R/jacquard-methods.R R/metaGSEA-internal.R R/metaGSEA-package.R R/plclust.gsea.R R/plclust_in_colour.R R/plot_gsea.leadingedge.HCL.R R/plot_gsea.leadingedge.HCL.auto.R R/plot_gsea.leadingedge.R R/plot_gsea.leadingedge.adjmat.R R/plot_gsea.leadingedge.barplot.R R/plot_gsea.leadingedge.heatmap.R R/plot_gsea.res.R R/plot_gsea.statistic.histograms.R R/plot_gsea.venn.R R/plot_gseacmp.barplot.R R/qplot.data.R R/reorder.gct.R R/test.broad.ftp.R README.md

TODO

inst/CHANGELOG

inst/INSTALL

inst/TODO

inst/bin/csv2xls

inst/bin/gsea.combine.updown.sh

inst/bin/gsea.compare.runs.1gmt.plot.sh

inst/bin/gsea.compare.runs.1gmt.sh

inst/bin/gsea.compare.runs.plot.sh

inst/bin/gsea.compare.runs.sh

inst/bin/gsea.fix.output.sh

inst/bin/gsea.links.sh

inst/bin/gsea.summarise.sh

inst/bin/gsea2xls.sh

inst/bin/heatmapimage-o.jar

inst/bin/tab2xls

inst/bin/xls2tab

inst/examples/all_aml_test.cls

inst/examples/all_aml_test.preprocessed.comp.marker.odf

inst/examples/all_aml_test.preprocessed.gct

inst/examples/all_aml_train.preprocessed0.odf

inst/examples/sample.clm

inst/examples/tmp.continuous.cls

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.

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drmjc/metaGSEA
Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Files in drmjc/metaGSEA
Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

R Package Documentation

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drmjc/metaGSEA Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Files in drmjc/metaGSEA Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

R Package Documentation

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We want your feedback!

drmjc/metaGSEA
Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Files in drmjc/metaGSEA
Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons