Files in drmjc/metaGSEA
Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

DESCRIPTION
NAMESPACE
R/GSEAhyperGTest.R R/average.replicates.gct.R R/catplot.GSEA.R R/chip2description.R R/collapse.gct.R R/collapse.gct2genesets.R R/convert.gct2submap.R R/convert.gsea.res2gct.R R/dist.gsea.R R/export.broad.cls.R R/export.broad.res.R R/export.gsea.R R/export.gsea.cdt.R R/export.gsea.chip.R R/export.gsea.edb.R R/export.gsea.gct.R R/export.gsea.gct.topTable.R R/export.gsea.gmt.R R/export.gsea.leadingedge.analysis.R R/export.gsea.odf.R R/export.gsea.odf.lmFit.R R/export.gsea.rnk.R R/export.gsea.rnk.topTable.R R/export.gsea.rpt.R R/genepattern.HeatMapImage.R R/genepattern2spd.R R/gsea.combine.R R/gsea.compare.runs.R R/gsea.compare.runs.filter.R R/gsea.compare.runs.sort.R R/gsea.convert.clm2cls.R R/gsea.filter.R R/gsea.fix.output.R R/gsea.gct.probes2genes.R R/gsea.gct.select.feature.columns.R R/gsea.gct.select.features.rows.R R/gsea.genesets2gct.R R/gsea.hardwire.rpt.paths.R R/gsea.length.R R/gsea.merge.R R/gsea.merge.dirs.R R/gsea.merge.tt.R R/gsea.rename.genesets.R R/gsea.reorder.gmt.by.rnk.R R/gsea.split.R R/gsea.summarise.R R/gsea.which.gmt.R R/gsealist.find.genesets.R R/gsealist2adjmat.R R/gsealist2genesetlist.R R/import.genepattern.odf.R R/import.gsea.R R/import.gsea.chip.R R/import.gsea.clm.R R/import.gsea.cls.R R/import.gsea.compare.runs.R R/import.gsea.edb.R R/import.gsea.gct.R R/import.gsea.gmt.R R/import.gsea.gmx.R R/import.gsea.leadingedge.R R/import.gsea.res.R R/import.gsea.rnk.R R/import.gsea.rpt.R R/import.gsea.topTable.R R/is.gsea.R R/is.gsea.dir.R R/is.gsea.res.R R/is.gsea.zip.R R/jacquard-methods.R R/metaGSEA-internal.R R/metaGSEA-package.R R/plclust.gsea.R R/plclust_in_colour.R R/plot_gsea.leadingedge.HCL.R R/plot_gsea.leadingedge.HCL.auto.R R/plot_gsea.leadingedge.R R/plot_gsea.leadingedge.adjmat.R R/plot_gsea.leadingedge.barplot.R R/plot_gsea.leadingedge.heatmap.R R/plot_gsea.res.R R/plot_gsea.statistic.histograms.R R/plot_gsea.venn.R R/plot_gseacmp.barplot.R R/qplot.data.R R/reorder.gct.R R/test.broad.ftp.R README.md
TODO
inst/CHANGELOG
inst/INSTALL
inst/TODO
inst/bin/csv2xls
inst/bin/gsea.combine.updown.sh
inst/bin/gsea.compare.runs.1gmt.plot.sh
inst/bin/gsea.compare.runs.1gmt.sh
inst/bin/gsea.compare.runs.plot.sh
inst/bin/gsea.compare.runs.sh
inst/bin/gsea.fix.output.sh
inst/bin/gsea.links.sh
inst/bin/gsea.summarise.sh
inst/bin/gsea2xls.sh
inst/bin/heatmapimage-o.jar
inst/bin/tab2xls
inst/bin/xls2tab
inst/examples/all_aml_test.cls
inst/examples/all_aml_test.preprocessed.comp.marker.odf
inst/examples/all_aml_test.preprocessed.gct
inst/examples/all_aml_train.preprocessed0.odf
inst/examples/sample.clm
inst/examples/tmp.continuous.cls
man/GMThyperGTest.Rd man/GSEAhyperGTest.Rd man/affy.pivot.table.Rd man/average.replicates.gct.Rd man/catplot.GSEA.2way.Rd man/catplot.GSEA.2way.vs.random.Rd man/catplot.GSEA.Rd man/catplot.GSEA.random.Rd man/chip2description.Rd man/collapse.gct.Rd man/collapse.gct.file.Rd man/collapse.gct2geneset.Rd man/convert.gct2submap.Rd man/convert.gsea.res2gct.Rd man/dist.gsea.Rd man/export.broad.cls.Rd man/export.broad.res.Rd man/export.gsea.Rd man/export.gsea.cdt.Rd man/export.gsea.chip.Rd man/export.gsea.edb.Rd man/export.gsea.gct.Rd man/export.gsea.gct.topTable.Rd man/export.gsea.gmt.Rd man/export.gsea.gtr.Rd man/export.gsea.leadingedge.analysis.Rd man/export.gsea.odf.Rd man/export.gsea.odf.lmFit.Rd man/export.gsea.rnk.Rd man/export.gsea.rnk.topTable.Rd man/export.gsea.rpt.Rd man/genepattern.HeatMapImage.Rd man/genepattern2spd.Rd man/gsea.combine.Rd man/gsea.compare.runs.1gmt.Rd man/gsea.compare.runs.filter.Rd man/gsea.compare.runs.sort.Rd man/gsea.convert.clm2cls.Rd man/gsea.filter.Rd man/gsea.filter.edb.Rd man/gsea.fix.output.Rd man/gsea.fix.output.detailed.enrichment.results.html.Rd man/gsea.fix.output.geneset.report.Rd man/gsea.fix.output.index.html.Rd man/gsea.gct.probes2genes.Rd man/gsea.gct.select.features.columns.Rd man/gsea.gct.select.features.rows.Rd man/gsea.genesets2gct.Rd man/gsea.hardwire.rpt.paths.Rd man/gsea.leadingedge.distance.Rd man/gsea.length.Rd man/gsea.merge.Rd man/gsea.merge.dirs.Rd man/gsea.merge.edb.Rd man/gsea.merge.edb.dirs.Rd man/gsea.merge.tt.Rd man/gsea.rename.genesets.Rd man/gsea.rename.genesets.edb.Rd man/gsea.reorder.gmt.by.rnk.Rd man/gsea.split.Rd man/gsea.summarise.Rd man/gsea.topTable.sort.Rd man/gsea.which.gmt.Rd man/gsea2adjmat.Rd man/gsealist.find.geneset.Rd man/gsealist2adjmat.Rd man/gsealist2genesetlist.Rd man/import.genepattern.odf.Rd man/import.gsea.Rd man/import.gsea.chip.Rd man/import.gsea.clm.Rd man/import.gsea.cls.Rd man/import.gsea.compare.runs.Rd man/import.gsea.edb.Rd man/import.gsea.gct.Rd man/import.gsea.gmt.Rd man/import.gsea.gmx.Rd man/import.gsea.leadingedge.Rd man/import.gsea.res.Rd man/import.gsea.rnk.Rd man/import.gsea.rpt.Rd man/import.gsea.topTable.Rd man/is.gsea.Rd man/is.gsea.dir.Rd man/is.gsea.gct.file.Rd man/is.gsea.list.Rd man/is.gsea.res.file.Rd man/is.gsea.zip.Rd man/jacquard-methods.Rd man/metaGSEA-package.Rd man/plclust.gsea.Rd man/plclust_in_colour.Rd man/plot_gsea.leadingedge.HCL.1clusterPerPage.Rd man/plot_gsea.leadingedge.HCL.Rd man/plot_gsea.leadingedge.HCL.auto.Rd man/plot_gsea.leadingedge.HCL.simple.Rd man/plot_gsea.leadingedge.Rd man/plot_gsea.leadingedge.adjmat.Rd man/plot_gsea.leadingedge.barplot.Rd man/plot_gsea.leadingedge.barplot.auto.Rd man/plot_gsea.leadingedge.heatmap.Rd man/plot_gsea.leadingedge.heatmap.auto.Rd man/plot_gsea.res.Rd man/plot_gsea.statistic.histograms.Rd man/plot_gsea.venn.Rd man/plot_gsea.venn.auto.Rd man/plot_gseacmp.barplot.Rd man/print.gsea.venn.Rd man/qplot.data.Rd man/reorder.gct.Rd man/reorder.gct.file.Rd man/subset.gsea.Rd man/test.broad.ftp.Rd test/test-all.R
drmjc/metaGSEA documentation built on May 15, 2019, 2:24 p.m.