Description Usage Arguments Value Author(s)
View source: R/plot_gsea.venn.R
Plot a Venn diagram of overlaps between genesets from >= 2 GSEA runs across a range of thresholds. By default, this will plot 4 venn diagrams: top 50 up, top 50 down, FDR<0.25 up, FDR<0.25 down
1 2 |
gsea.list |
a list of GSEA objects |
names |
the GSEA run names for labelling the Venn diagram |
file |
the path to the output pdf file, or |
main |
the plot title |
N |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
FDR |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
P |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
FWER |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
... |
>=2 GSEA results; or |
none. prints a venn diagram
Mark Cowley
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