gsea.hardwire.rpt.paths: Rewire the file locations referenced within a GSEA rpt file.
In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons
Description
Usage
Arguments
Value
Author(s)
View source: R/gsea.hardwire.rpt.paths.R
Description
Why? If you run a GSEA on a GenePattern server, you can end up with files
in a rpt file that you can
no longer access on the machine where you're analysing the GSEA results...
Useful if you have a directory full of chip files, and gmx files.
Usage
1
2
gsea.hardwire.rpt.paths(dir, chip.dir = "/pwbc/data/GSEA/chips",
gmx.dir = "/pwbc/data/GSEA/gmt/v2.5")
Arguments
dir
a GSA directory. The rpt file within this dir will be modified.
chip.dir
the directory containing your GSEA .chip files
gmx.dir
the directory containing your GSEA .gmx/.gmt files
Value
none. the rpt file will be modified.
Author(s)
Mark Cowley, 2009-12-11
drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
View source: R/gsea.hardwire.rpt.paths.R
Description
Why? If you run a GSEA on a GenePattern server, you can end up with files in a rpt file that you can no longer access on the machine where you're analysing the GSEA results... Useful if you have a directory full of chip files, and gmx files.
Usage
1 2 | gsea.hardwire.rpt.paths(dir, chip.dir = "/pwbc/data/GSEA/chips",
gmx.dir = "/pwbc/data/GSEA/gmt/v2.5")
|
Arguments
dir |
a GSA directory. The rpt file within this dir will be modified. |
chip.dir |
the directory containing your GSEA .chip files |
gmx.dir |
the directory containing your GSEA .gmx/.gmt files |
Value
none. the rpt file will be modified.
Author(s)
Mark Cowley, 2009-12-11
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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