API for drmjc/metaGSEA
Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Global functions
.qplot.data Man page
GMThyperGTest Man page
GSEAhyperGTest Man page
affy.pivot.table Man page
average.replicates.gct Man page
catplot.GSEA Man page
catplot.GSEA.2way Man page
catplot.GSEA.2way.vs.random Man page
catplot.GSEA.random Man page
chip2description Man page
collapse.gct Man page
collapse.gct.file Man page
collapse.gct2geneset Man page
convert.gct2submap Man page
convert.gsea.res2gct Man page
dist.gsea Man page
export.broad.cls Man page
export.broad.res Man page
export.gsea Man page
export.gsea.cdt Man page
export.gsea.chip Man page
export.gsea.edb Man page
export.gsea.gct Man page
export.gsea.gct.topTable Man page
export.gsea.gmt Man page
export.gsea.gtr Man page
export.gsea.leadingedge.analysis Man page
export.gsea.odf Man page
export.gsea.odf.lmFit Man page
export.gsea.rnk Man page
export.gsea.rnk.topTable Man page
export.gsea.rpt Man page
genepattern.HeatMapImage Man page
genepattern2spd Man page
gsea.combine Man page
gsea.compare.runs.1gmt Man page
gsea.compare.runs.filter Man page
gsea.compare.runs.sort Man page
gsea.convert.clm2cls Man page
gsea.filter Man page
gsea.filter.edb Man page
gsea.fix.output Man page
gsea.fix.output.detailed.enrichment.results.html Man page
gsea.fix.output.geneset.report Man page
gsea.fix.output.index.html Man page
gsea.gct.probes2genes Man page
gsea.gct.select.features.columns Man page
gsea.gct.select.features.rows Man page
gsea.genesets2gct Man page
gsea.hardwire.rpt.paths Man page
gsea.leadingedge.distance Man page
gsea.length Man page
gsea.merge Man page
gsea.merge.dirs Man page
gsea.merge.edb Man page
gsea.merge.edb.dirs Man page
gsea.merge.tt Man page
gsea.rename.genesets Man page
gsea.rename.genesets.edb Man page
gsea.reorder.gmt.by.rnk Man page
gsea.split Man page
gsea.summarise Man page
gsea.topTable.sort Man page
gsea.which.gmt Man page
gsea2adjmat Man page
gsealist.find.geneset Man page
gsealist2adjmat Man page
gsealist2genesetlist Man page
import.genepattern.odf Man page
import.gsea Man page
import.gsea.chip Man page
import.gsea.clm Man page
import.gsea.cls Man page
import.gsea.compare.runs Man page
import.gsea.edb Man page
import.gsea.gct Man page
import.gsea.gmt Man page
import.gsea.gmx Man page
import.gsea.leadingedge Man page
import.gsea.res Man page
import.gsea.rnk Man page
import.gsea.rpt Man page
import.gsea.topTable Man page
is.gsea Man page
is.gsea.dir Man page
is.gsea.gct.file Man page
is.gsea.list Man page
is.gsea.res.file Man page
is.gsea.zip Man page
jacquard Man page
jacquard,GeneSet,GeneSet-method Man page
jacquard,character,character-method Man page
jacquard,numeric,numeric-method Man page
metaGSEA Man page
metaGSEA-package Man page
plclust.gsea Man page
plclust_in_colour Man page
plot_gsea.hclust Man page
plot_gsea.leadingedge Man page
plot_gsea.leadingedge.HCL Man page
plot_gsea.leadingedge.HCL.1clusterPerPage Man page
plot_gsea.leadingedge.HCL.auto Man page
plot_gsea.leadingedge.HCL.simple Man page
plot_gsea.leadingedge.adjmat Man page
plot_gsea.leadingedge.barplot Man page
plot_gsea.leadingedge.barplot.auto Man page
plot_gsea.leadingedge.heatmap Man page
plot_gsea.leadingedge.heatmap.auto Man page
plot_gsea.res Man page
plot_gsea.statistic.histograms Man page
plot_gsea.venn Man page
plot_gsea.venn.auto Man page
plot_gseacmp.barplot Man page
print.gsea.venn Man page
reorder.gct Man page
reorder.gct.file Man page
subset.gsea Man page
test.broad.ftp Man page
drmjc/metaGSEA documentation built on May 15, 2019, 2:24 p.m.