gsea.merge.dirs: Merge 2 gsea runs, by referencing only the GSEA directories.

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

This only merges the contents of the edb directory. Merging the individual html geneset reports is very complex... Why? so you can examine them both together in the Leading Edge analysis tool of course! See also gsea.merge

Usage

gsea.merge.dirs(gsea.dir1, gsea.dir2, prefix, suffix, outdir)

Arguments

gsea.dir1	paths to two GSEA directories (the ones that contain index.html)
gsea.dir2	paths to two GSEA directories (the ones that contain index.html)
prefix	both should be character(2) indicating how you want the genesets to be renamed so that they reflect which experimental run they came from.
suffix	both should be character(2) indicating how you want the genesets to be renamed so that they reflect which experimental run they came from.
outdir	The path to an edb directory that will be created.

Author(s)

Mark Cowley, 2009-10-06

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.