chip2description: Convert a GSEA chip file or object into a vector of...
In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Convert a GSEA chip file or object into a vector of descriptions.

1 2	chip2description(chip.file = NULL, chip = NULL, sep = ": ", probes = NULL, genoloc = NULL)

`chip.file`	the path to a chip file; or:
`chip`	an imported chip object (see `import.gsea.chip`)
`sep`	the field separator between the symbol and description
`probes`	an optional vector of probe names to limit the result to. Default is `NULL` whereby all probes will be converted
`genoloc`	optional vector of genomic locations, `NA` and `NULL` allowed, MUST be in identical order to the rows of the chip

a character vector of description. If genoloc is provided, then eg “|@chr6:1950428-1950681|” will be appended.

Mark Cowley

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.

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Description