gsea.gct.select.features.columns: Restrict the number of columns in a gct & cls file.

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

You can do this either by indexing the columns ([1:n]), or by specifying the names of the classes. The order of columns, or classes is respected.

Usage

gsea.gct.select.features.columns(gct.file, cls.file, gct.out, cls.out,
  columns = NULL, classes = NULL, cls.start.value = 0)

Arguments

gct.file	the path to a GCT file
cls.file	the path to a CLS file
gct.out	the path to a GCT output file
cls.out	the path to a CLS output file
columns	the column indices to include, or NULL
classes	the classes to include, or NULL
cls.start.value	most cls files start from 0, but that can be changed if necessary

Value

none. creates a gct and cls file containing the specified subset of classes or columns.

Author(s)

Mark Cowley, 2010-07-06

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.