export.gsea.gmt: Export a gmt file Genesets for BROAD's GSEA are usually...

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

See the detailed file specification, and the import.gsea.gmt function.

Usage

export.gsea.gmt(x, f, description = rep("na", length(x)))

Arguments

x	A list of genesets. x must have names which are the geneset names, and the elements are character vectors.
f	the file name
description	a character vector for the description column. it is recycled if its too short. The order must match up with the rows of x.

Value

none. it creates a gmt file.

Author(s)

Mark Cowley, 2009-04-29

References

http://www.broadinstitute.org/cancer/software/genepattern/tutorial/gp_fileformats.html#gmt

See Also

import.gsea.gmt

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.