gsea.gct.select.features.rows: Subset the rows of a gct file. The GenePattern...

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

Subset the rows of a gct file. The GenePattern SelectFeaturesRows tool only operates on the probe id column, however GCT files also have a gene symbol column. Restrict the rows of the GCT file, using either a vector or file of probe ID's or gene symbols, using exact word matches

Usage

gsea.gct.select.features.rows(gct.file, gct.out, rows = NULL,
  rows.file = NULL)

Arguments

gct.file	the path to a gct file
gct.out	the path to the gct result file
rows	a character vector of probe id or symbols, or
rows.file	a file containing probe id's or symbols. this overrides rows

Value

none. creates a gct file with rows that match the symbols or probe ID's in rows or rows.file.

Author(s)

Mark Cowley, 2010-07-06

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.