export.gsea.odf: Export a table of data to a GenePattern odf file

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

ODF files are tab delimited documents with fairly extensive header lines. Strongly recommend you look at the documentation for odf files (see below), and to see it in action, see export.gsea.odf.lmFit.

Usage

export.gsea.odf(data, file, header.lines = NULL, colclasses = NULL)

Arguments

data	a data.frame or matrix
file	the path to the output odf file
header.lines	a character vector of header lines, or NULL
colclasses	a character vector of column class names. if NULL, then they are aut-determined from the colclass of each column, and mapped to GenePattern column class names

Value

none. writes a file

Note

header lines.
the header lines should not contain "ODF 1.0", "HeaderLines=X", though the code ignore them. The only required field that you should consider providing is the “Model=DataSet”. The “DataLines=XYZ” header line is determined automatically.

Author(s)

Mark Cowley, 2009-11-30

See Also

export.gsea.odf.lmFit http://www.broadinstitute.org/cancer/software/genepattern/tutorial/gp_fileformats.html#odf

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.