catplot.GSEA.2way: Plot a CAT plot upon 2 GSEA objects.

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

This is a helper function, you should probably consider using catplot.GSEA.

Usage

catplot.GSEA.2way(x, y, col = 1, proportion = FALSE, add = FALSE,
  FDRthresh = 1.01, main = "")

Arguments

x	a GSEA object
y	a GSEA object
col	the plot character foreground colour. default = 1 = “black”
proportion	if TRUE, x-axis is proportion of all genesets, if FALSE (default), the number of genesets is plotted.
add	logical: add this to existing plot? if FALSE, then create a new plotting device.
FDRthresh	If you'd like the pch to change depending on which of A or B is significant, then choose a threshold of 0.25 for example. Pch will change depending on whether A and B are both significant, only one is significant, or neither are.
main	the plot title. set to “” to ignore

Value

none. makes a plot

Author(s)

Mark Cowley, 2011-07-19

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.