import.gsea.gmt: Import a gmt file that is commonly used by Broad's GSEA.
In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons
Description
Usage
Arguments
Value
Author(s)
View source: R/import.gsea.gmt.R
Description
Either specify the full path to a gmt file, or from a GSEA PreRanked
run, provide the path to the top-level directory that contains the
index.html
Usage
1
Arguments
x
either the path to a gmt file, the dir that contains index.html
from a GSEA PreRanked run, or a URL to the Broad Institute's website (see
import.gsea.rpt)
Value
a named list where each element is a vector of gene symbols the
names are the geneset names
Author(s)
Mark Cowley, 2009-01-14
drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
View source: R/import.gsea.gmt.R
Description
Either specify the full path to a gmt file, or from a GSEA PreRanked run, provide the path to the top-level directory that contains the index.html
Usage
1 |
Arguments
x |
either the path to a gmt file, the dir that contains index.html from a GSEA PreRanked run, or a URL to the Broad Institute's website (see import.gsea.rpt) |
Value
a named list where each element is a vector of gene symbols the names are the geneset names
Author(s)
Mark Cowley, 2009-01-14
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.