Description Usage Arguments Value Author(s)
View source: R/gsea.rename.genesets.R
This is intended to be used by gsea.rename.genesets
, which should calculate
old.names
and new.names
. Entries in edb
, given that they are xml are in no
strict order (although they seem to be ordered from most -ve NES to most
+ve NES). Thus you need to supply the old.names
is so that we can ensure
the entries in edb get renamed correctly.
1 | gsea.rename.genesets.edb(edb, old.names, new.names)
|
edb |
an XMLDocument. See |
old.names |
a vector of original geneset names. these should be found within the edb names |
new.names |
the new names, in the same order as the old names. |
An mutable XMLInternalDOM
(ie an XML tree much like an XMLDocument
but which can be modified) which is a copy of the original edb
XMLDocument.
Mark Cowley, 2009-10-06
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