Description Usage Arguments Value Author(s) See Also Examples
View source: R/import.gsea.gct.R
Import a GenePattern gct file into R as a data.frame object. If a clm.file is also provided, then the columns of the gct are optionally subsetted, reordered, and renamed as per the clm.
1 | import.gsea.gct(f, clm.file = NULL, check.names = FALSE)
|
f |
[character] the path to a gct file |
clm.file |
[optional] path to a clm.file |
check.names |
logical: R likes to make sure that the column names are 'syntactically valid', If you don't care, then choose FALSE. default is FALSE. |
a data.frame
of usually gene expression data. columns 1&2 are annotation, 3+ are data.
Mark Cowley, 2009-07-27
http://www.broadinstitute.org/cancer/software/genepattern/tutorial/gp_fileformats.html#gct, http://www.broadinstitute.org/cancer/software/genepattern/tutorial/gp_fileformats.html#clm
1 2 3 4 5 | ## Not run:
f <- "ftp://ftp.broadinstitute.org/pub/genepattern/datasets/all_aml/all_aml_test.gct"
import.gsea.gct(f)
## End(Not run)
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