plot_gsea.leadingedge.HCL.1clusterPerPage: Take a GSEA object, do an HCL between the leading edge genes,...

Description Usage Arguments Author(s)

View source: R/plot_gsea.leadingedge.HCL.R

Description

Take a GSEA object, do an HCL between the leading edge genes, cut the HCL, then plot 1 HCL per page of a PDF.

Usage

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plot_gsea.leadingedge.HCL.1clusterPerPage(x,
  main = "Leading edge similarities", xlab = "",
  hclust.method = "complete", h = 0.99, ...)

Arguments

x

a GSEA object

main

the plot title

xlab

the x label

hclust.method

the hierarchical clustering method. see hclust

h

numeric scalar or vector with heights where the tree should be cut. (see cutree)

...

see plot_gsea.leadingedge.HCL.simple

Author(s)

Mark Cowley, 2009-09-01


drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.