Description Usage Arguments Author(s)
View source: R/gsea.merge.tt.R
Merge N GSEA toptables, retaining a column of interest (eg NOM.p.val, or FDR...)
1 | gsea.merge.tt(..., keep = "NES", method = c("intersect", "union")[1])
|
keep |
which column to keep: “NAME”, “SIZE”, “RANK”, “DIRECTION”, “ENRICHED.PHENOTYPE”, “ES”, “NES”, “NOM.p.val”, “FDR.q.val”, “FWER.p.val”, “RANK.AT.MAX”, “LEADING.EDGE”, “LEADING.EDGE.SIZE” |
method |
which genesets to keep if there are differences across runs
“intersect” - just the genesets found in all GSEA runs; “union” - all the
genesets found in any GSEA run. |
... |
a single gsea.list object, a list of gsea toptables, or individually named GSEA toptables. |
Mark Cowley
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