gsea.merge.tt: Merge N GSEA toptables, retaining a column of interest (eg...

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

Merge N GSEA toptables, retaining a column of interest (eg NOM.p.val, or FDR...)

Usage

gsea.merge.tt(..., keep = "NES", method = c("intersect", "union")[1])

Arguments

keep	which column to keep: “NAME”, “SIZE”, “RANK”, “DIRECTION”, “ENRICHED.PHENOTYPE”, “ES”, “NES”, “NOM.p.val”, “FDR.q.val”, “FWER.p.val”, “RANK.AT.MAX”, “LEADING.EDGE”, “LEADING.EDGE.SIZE”
method	which genesets to keep if there are differences across runs “intersect” - just the genesets found in all GSEA runs; “union” - all the genesets found in any GSEA run. NA's will be used for those genesets that were not observed.
...	a single gsea.list object, a list of gsea toptables, or individually named GSEA toptables.

Author(s)

Mark Cowley

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.