gsea.merge: Merge two GSEA objects.
In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons
Description
Usage
Arguments
Author(s)
Description
You would want to do this if you compare two rnk files to 1 gmt file (eg
c2_all), and want to compare the significant genesets between these runs.
It's no good knowing that geneset X is in the top 5 in both runs if they
contain markedly different genes in their leading edges.
Usage
1
gsea.merge(gsea1, gsea2, prefix = NULL, suffix = NULL, warn = TRUE)
Arguments
gsea1
GSEA object to be merged.
gsea2
GSEA object to be merged.
prefix
character(2) containing optional prefix; or NULL
suffix
character(2) containing optional suffix; or NULL
warn
logical: produce a warning if prefix=NULL && suffix=NULL
Author(s)
Mark Cowley, 2009-10-14
drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.
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Description Usage Arguments Author(s)
Description
You would want to do this if you compare two rnk files to 1 gmt file (eg c2_all), and want to compare the significant genesets between these runs. It's no good knowing that geneset X is in the top 5 in both runs if they contain markedly different genes in their leading edges.
Usage
1 | gsea.merge(gsea1, gsea2, prefix = NULL, suffix = NULL, warn = TRUE)
|
Arguments
gsea1 |
GSEA object to be merged. |
gsea2 |
GSEA object to be merged. |
prefix |
character(2) containing optional prefix; or |
suffix |
character(2) containing optional suffix; or |
warn |
logical: produce a warning if |
Author(s)
Mark Cowley, 2009-10-14
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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