Description Usage Arguments Author(s) Examples
View source: R/import.gsea.compare.runs.R
Import the output produced by gsea.compare.runs.sh
1 | import.gsea.compare.runs(xls, gmt = .GSEA.GMT.CATEGORIES)
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xls |
an XLS file produced by running import.gsea.compare.runs.sh, or import.gsea.compare.runs.1gmt.sh |
gmt |
either an integer indicating which sheet of the xls to import, or the name of the gmt file. use the latter if gsea was run on all 15 of the gmt categories listed in .GSEA.GMT.CATEGORIES |
Mark Cowley, 2009-03-23
1 2 3 4 5 6 7 | ## Not run:
gseacmp <- import.gsea.compare.runs("GSEA/gsea.compare.runs.xls")
gseacmp <- import.gsea.compare.runs("GSEA/gsea.compare.runs.xls", c("c2_all"))
gseacmp <- import.gsea.compare.runs("GSEA/gsea.compare.runs.xls", c("c2_all", "c5_bp"))
gseacmp <- import.gsea.compare.runs("GSEA/gsea.compare.runs.xls", grep("all", .GSEA.GMT.CATEGORIES, value=TRUE))
## End(Not run)
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