gsealist.find.geneset: From a list of GSEA's, find the elements that contain...
In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons
Description
Usage
Arguments
Value
Scenario
Author(s)
View source: R/gsealist.find.genesets.R
Description
From a list of GSEA's, find the elements that contain particular genesets
of interest.
Usage
1
gsealist.find.geneset(gsea.list, patterns)
Arguments
gsea.list
a list of GSEA objects.
patterns
a vector of patterns which should be unique enough to find
just one cluster
Value
a vector of geneset indices where each pattern was found. IF one of
the patterns is not unique enough, then a list is returned.
Scenario
You've used gsea.split to split a LARGE GSEA run into ~100 smaller, related
GSEA runs. From a small list of genesets of interest (represented by
patterns), you want to know which of these smaller GSEA runs contain your
genesets of interest.
Author(s)
Mark Cowley, 2009-10-16
drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.
R Package Documentation
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Description Usage Arguments Value Scenario Author(s)
View source: R/gsealist.find.genesets.R
Description
From a list of GSEA's, find the elements that contain particular genesets of interest.
Usage
1 | gsealist.find.geneset(gsea.list, patterns)
|
Arguments
gsea.list |
a list of GSEA objects. |
patterns |
a vector of patterns which should be unique enough to find just one cluster |
Value
a vector of geneset indices where each pattern was found. IF one of the patterns is not unique enough, then a list is returned.
Scenario
You've used gsea.split to split a LARGE GSEA run into ~100 smaller, related
GSEA runs. From a small list of genesets of interest (represented by
patterns), you want to know which of these smaller GSEA runs contain your
genesets of interest.
Author(s)
Mark Cowley, 2009-10-16
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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