Description Usage Arguments Value Author(s)
View source: R/plot_gsea.venn.R
Print a Venn diagram of overlaps between genesets from >= 2 GSEA runs
1 2 3 4 |
gsea.list |
a list of GSEA objects |
names |
the GSEA run names for labelling the Venn diagram |
N |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
NES |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
FDR |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
P |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
FWER |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
direction |
see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones. |
... |
>=2 GSEA results; or |
none. prints a venn diagram
Mark Cowley
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