print.gsea.venn: Print a Venn diagram of overlaps between genesets from >= 2...

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

Print a Venn diagram of overlaps between genesets from >= 2 GSEA runs

Usage

## S3 method for class 'gsea.venn'
print(..., gsea.list = NULL, names = NULL, N = NULL,
  NES = NULL, FDR = NULL, P = NULL, FWER = NULL,
  direction = c("either", "up", "down"))

Arguments

gsea.list	a list of GSEA objects
names	the GSEA run names for labelling the Venn diagram
N	see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones.
NES	see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones.
FDR	see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones.
P	see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones.
FWER	see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones.
direction	see gsea.filter. It doesn't make sense to do a Venn diagram on all genesets, so you need to filter to find the significant ones.
...	>=2 GSEA results; or

Value

none. prints a venn diagram

Author(s)

Mark Cowley

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.