jacquard-methods: The Jacquard coefficient as a measure of overlap in terms of...

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

Motivated by the leading edge analysis of Broad's GSEA.

Usage

jacquard(a, b)

## S4 method for signature 'character,character'
jacquard(a, b)

## S4 method for signature 'numeric,numeric'
jacquard(a, b)

## S4 method for signature 'GeneSet,GeneSet'
jacquard(a, b)

Arguments

a	a vector of entities, be they characters, integers or GeneSet
b	a vector of entities, be they characters, integers or GeneSet

Value

a decimal value in [0,1] where 0 represents no overlap, and 1.0 indicating 100% overlap - ie a=b

Author(s)

Mark Cowley, 2009-04-06

Examples

jacquard(letters[1:5], letters[3:5])
jacquard(1:5, 3:5)

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.