plclust.gsea: Plot an hclust object, that has been made from GSEA genesets.

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

Plot an hclust object, that has been made from GSEA genesets.

Usage

plclust.gsea(hc, main = "Leading edge similarities", xlab = "",
  sub = NULL, yaxis = c("similarity", "distance"), lab.col = "black",
  hang = 0.03, cex = NULL, cex.main = 1, ...)

plot_gsea.hclust(hc, main = "Leading edge similarities", xlab = "",
  sub = NULL, yaxis = c("similarity", "distance"), lab.col = "black",
  hang = 0.03, cex = NULL, cex.main = 1, ...)

Arguments

hc	an object of class hclust
main	see par
xlab	see par
sub	see par
yaxis	what type of yaxis scale do you want? “similarity”, or “distance”?
lab.col	argument to change the colour of the text labels. (not yet implemented)
hang	see plclust default=0.03
cex	see par. default=NULL
cex.main	see par. default=1
...	arguments passed to plclust'

Value

none. creates a plot

Author(s)

Mark Cowley, 2009-09-04

See Also

plclust

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.