import.gsea.leadingedge: Import the leading edge subset of genes from each category....

In drmjc/metaGSEA: Meta-analysis of GSEA analyses, including intra- and inter-experiment comparisons

Description

Import the leading edge subset of genes from each category. Must provide the path to the top-level directory that contains the “index.html”

Usage

import.gsea.leadingedge(dir, plot = FALSE)

Arguments

dir	the top level dir that contains the index.html file
plot	logical: leading edge HCL's on top 50 and FDR<0.05 genesets? see plot_gsea.leadingedge.HCL

Value

a named list where each element is a vector of gene symbols that were contained within the leading edge subset for that category. The list names are the gene set names

Author(s)

Mark Cowley, 2009-04-06

drmjc/metaGSEA documentation built on Aug. 8, 2020, 1:53 p.m.