API for drmjc/microarrays
A collection of microarray and genomic helper code.

Global functions
DEgenes.topTable	Man page
DetectionCalls	Man page
DetectionCalls,ExpressionSet,missing-method	Man page
DetectionCalls,ExpressionSet,numeric-method	Man page
DetectionCalls,LumiBatch,missing-method	Man page
DetectionCalls,LumiBatch,numeric-method	Man page
ExtractionSoftware	Man page
ExtractionSoftware,LumiBatch-method	Man page
LumiBatch2GEOarchive	Man page
LumiBatch2gct	Man page
RankProd.signed.score	Man page
agilent.miRNA.cbind	Man page
agilent.miRNA.filter.GX10	Man page
agilent.miRNA.normalise.GX10	Man page
agilent.miRNA.preprocess	Man page
agilent.miRNA.preprocess.GX10	Man page
agilent.miRNA.threshold.GX10	Man page
as.data.frame.AnnotatedDataFrame	Man page
average.pval.replicates	Man page
average.pval.replicates,ANY,missing-method	Man page
average.pval.replicates,data.frame,ANY-method	Man page
average.pval.replicates,matrix,character-method	Man page
average.pval.replicates,matrix,factor-method	Man page
average.replicates	Man page
average.replicates,ANY,missing-method	Man page
average.replicates,AnnotatedDataFrame,character-method	Man page
average.replicates,AnnotatedDataFrame,factor-method	Man page
average.replicates,LumiBatch,character-method	Man page
average.replicates,LumiBatch,factor-method	Man page
average.replicates,data.frame,ANY-method	Man page
average.replicates,eSet,character-method	Man page
average.replicates,eSet,factor-method	Man page
average.replicates,matrix,character-method	Man page
average.replicates,matrix,factor-method	Man page
barplot_lmFit	Man page
blatGene	Man page
calc.best.probe.topTable	Man page
catplot.RankProd	Man page
collapse	Man page
collapse,LumiBatch,logical,logical,function,character-method	Man page
collapse,LumiBatch,missing,missing,missing,missing-method	Man page
collapse.topTable	Man page
controlData<-	Man page
controlData<-,LumiBatch,NULL-method	Man page
controlData<-,LumiBatch,data.frame-method	Man page
convert.partek2topTable	Man page
dotplot	Man page
dotplot,ExpressionSet,ExpressionSet,ANY-method	Man page
dotplot,ExpressionSet,missing,ANY-method	Man page
dotplot,ExpressionSet,numeric,ANY-method	Man page
dotplot,numeric,ExpressionSet,ANY-method	Man page
export.DEgenes.topTable	Man page
export.gsea.rnk.RankProd	Man page
export.topTable	Man page
hist_pvals_pi0	Man page
import.Agilent.GeneView.Experiment	Man page
import.Agilent.GeneView.File	Man page
import.agilent	Man page
import.agilent.column2table	Man page
import.illumina.bgx	Man page
is.topTable.list	Man page
logFC2signedFC	Man page
lowessMA	Man page
make.sample.info.Agilent	Man page
merge_topTable	Man page
mget.chain	Man page
mget.multi	Man page
mget2	Man page
microarrays	Man page
microarrays-package	Man page
normalizeQuantiles.list	Man page
plotMA.all	Man page
plot_arrayWeights	Man page
plot_cor_topTable	Man page
plot_dabg_vs_rma	Man page
plot_exprs_vs_detection	Man page
plot_exprs_vs_detection,ExpressionSet,character,character,missin	Man page
plot_exprs_vs_detection,ExpressionSet,character,character,numeri	Man page Man page Man page
plot_exprs_vs_detection,ExpressionSet,character,missing,missing,	Man page
plot_exprs_vs_detection,ExpressionSet,missing,missing,missing,mi	Man page
plot_genespringGX_lines	Man page
plot_lumi_QC_all	Man page
plot_venn2D_topTable	Man page
plot_venn3D_topTable	Man page
round.topTable	Man page
sampleNames<-	Man page
sampleNames<-,LumiBatch-method	Man page
sort	Man page
sort,ExpressionSet-method	Man page
sort,LumiBatch-method	Man page
subset	Man page
subset,LumiBatch-method	Man page
subset.LumiBatch	Man page
subset.MArrayLM	Man page
subset.eSet	Man page
summarise.dabg	Man page
summarise.topTable	Man page
summarise.topTable.list	Man page
summarise.topTable.updown	Man page
topTable.SE	Man page
topTable.all	Man page
topTable.fixFC	Man page
topTable.to.label	Man page
transform_Agilent_log	Man page
volcanoplot_topTable	Man page
volcanoplot_topTable_PandQ	Man page