genesbyringqvistpercentile: Find genes based on your specified expression percentile and...
In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description Arguments Value

Find genes based on your specified expression percentile and growth conditions. <BR>Interaction experiments were performed between G. intestinalis GL50803 and 21-day differentiated Caco-2 cells. Trophozoites were separated and collected from the interaction cultures at 1.5 h, 6 h and 18 h time points. In addition, trophozoites of the same time points were harvested from standard TYI-S-33 cultures and from cultures in only interaction medium (DMEM). Microarrays of all samples and time points were performed with a common reference, a pool of trophozoites from the 0 hr time point of three replicate experiments. At least two 2-channel arrays were performed for each time point.

`ringqvist_study`	Select a growth condition.
`min_expression_percentile`	Lower bound on expression percentile.
`max_expression_percentile`	Upper bound on expression percentile.
`protein_coding_only`	Should only protein coding genes be returned?
`o-fields`	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
`o-tables`	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
`.convert`	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and `TRUE`, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is `FALSE`, the value from the Web server is returned as is.
`.url`	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
`.json`	a logical value controlling whether to use the JSON or the XML version of the method