genesbyrnaseqexpressionfoldchange: Find <i>T. brucei</i> genes that are differentially expressed...

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find <i>T. brucei</i> genes that are differentially expressed between blood and procyclic forms based on RNA sequence profiles. Select a comparison and reference lifecycle stage, your desired fold induction and the direction of regulation. <br> This data was provided prepublication by George Cross.<br/>NOTE: Due to computational limitations, RNA abundance data for repeated genes are not included

Arguments

RNA_tb_fc_two_pd	Choose a life cycle stage
RNA_tb_fc_one_pd	Choose a life cycle stage
fold_change	Enter a non-negative number. NOTE: Fold change is reported in the summary as positive numbers for up-regulated genes and negative numbers for down-regulated genes
regulated_dir	For ConditionA vs. ConditionB, select up-regulated for genes where ConditionA > ConditionB and select down-regulated for genes where ConditionB > ConditionA.
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

text/xml text/plain

duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.