genesbysucqpercentile: In this study three isogenic lines of P. falciparum...
In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description Arguments Value

In this study three isogenic lines of P. falciparum (106/1K76, 106/176I, and 106/76I-352K) were compared to each other with or without CQ treatment (3-hours, 3 biological replicas). The Affymetric Gene Chip was used to generate gene expression profiles.

For this study the parental line is 106/1K76.

For further details please refer to the original publication:

<a href="http://www.ncbi.nlm.nih.gov/sites/entrez?Db=Pubmed&term=18575593[UID]">Jiang H, Patel JJ, Yi M, Mu J, Ding J, Stephens R, Cooper RA, Ferdig MT, Su XZ. Genome-wide compensatory changes accompany drug- selected mutations in the Plasmodium falciparum crt gene. PLoS One 2008 Jun 25;3(6):e2484</a>.

`suCqSamples`	Select a Sample. Provide one or more values. Use comma as a delimter.
`min_expression_percentile`	Lower bound on expression percentile.
`max_expression_percentile`	Upper bound on expression percentile.
`o-fields`	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
`o-tables`	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
`.convert`	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and `TRUE`, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is `FALSE`, the value from the Web server is returned as is.
`.url`	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
`.json`	a logical value controlling whether to use the JSON or the XML version of the method