genesbytelomereproximity: Find genes within a given distance from the start and end...

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find genes within a given distance from a telomere. We are using the start and end positions of chromosomes to define the location of the telomere. (The actual telomeres are not included in the chromosome sequence as a consequence of their repetitiveness.) Your search should take into account that the actual location of the telomere is <b>near</b> the end of the chromosome.

Arguments

organism	Organism Provide one or more values. Use comma as a delimter.
distanceFromTelomere	Enter an upper bound on the distance.
chromosome_telomere	Chromosome Provide one or more values. Use comma as a delimter.
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

text/xml text/plain

duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.