geneswithsignalpeptide: Find genes that are predicted to encode a signal peptide...

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find genes that are predicted to encode a signal peptide. <br><br> The predictions are made with the <a href="http://www.cbs.dtu.dk/services/SignalP/">SignalP</a> program.

Arguments

organism	Organism Provide one or more values. Use comma as a delimter.
min_sigp_sum_score	SignalP-NN (neural network) provides four scores and a conclusion for each such that the conclusion is 1 if the score meets a certain criteria and 0 otherwise. The SignalP summary conclusion is the sum of the four conclusions generated by SignalP, thus four is the highest score possible. We consider a summary conclusion score of three to be significant
min_sigp_d_score	The D-score is the average of the S-mean and Y-max score from SignalP-NN
min_sigp_signal_probability	Signal Probability from SignalP-HMM
any_or_all_sigp	Union or intersection of advanced parameters.
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

text/xml text/plain

duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.