Find genes whose expression was found to be up-regulated or down-regulated in Giardia lamblia Trophozoites after encystation by <a href="http://www.cbil.upenn.edu/PaGE/">PaGE</a> differential expression analysis. <br><br>Two protocols were used to encyst parasites <i>in vitro</i>: the standard 2-step, and a lipid (cholesterol) starvation protocol. Encystation-specific changes of gene expression were analyzed at 45 minutes, 3 and 7 hours post induction. <br><br>Morf L, Spycher C, Rehrauer H, Fournier CA, Morrison HG, Hehl AB. <a href="http://www.ncbi.nlm.nih.gov/pubmed/20693303">The transcriptional response to encystation stimuli in Giardia lamblia is restricted to a small set of genes.</a>
gl_exprnsample_two |
Choose one or more comparisons. Choosing more than one will result in the union of results. |
confidence |
PaGE reports 1 - False Discovery Rate (FDR), which is called the "confidence" for the predictions. The FDR of a set of predictions is the expected percent of false predictions in the set of predictions. For example if the algorithm returns 100 genes with a false discovery rate of .3 (confidence=0.7) then we should expect 70 of them to be correct. |
fold_change |
Enter a non-negative number. NOTE: Fold change is reported in the summary as positive numbers for up-regulated genes and negative numbers for down-regulated genes |
regulated_dir |
For ConditionA vs. ConditionB, select up-regulated for genes where ConditionA > ConditionB and select down-regulated for genes where ConditionB > ConditionA. |
o-fields |
Single valued attributes of the feature. Provide one or more values. Use comma as a delimter. |
o-tables |
Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter. |
.convert |
a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and |
.url |
the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server. |
.json |
a logical value controlling whether to use the JSON or the XML version of the method |
text/xml text/plain
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