giardiagenesbyexpressionpercentileprofiletwo: Find genes by expression percentile analysis

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find genes whose expression percentile was found to be within a certain percentile range in ANY chosen Giardia lamblia Trophozoite Encysted or Control sample. <br><br>Two protocols were used to encyst parasites <i>in vitro</i>: the standard 2-step, and a lipid (cholesterol) starvation protocol. Encystation-specific changes of gene expression were analyzed at 45 minutes, 3 and 7 hours post induction. <br><br>Morf L, Spycher C, Rehrauer H, Fournier CA, Morrison HG, Hehl AB. <a href="http://www.ncbi.nlm.nih.gov/pubmed/20693303">The transcriptional response to encystation stimuli in Giardia lamblia is restricted to a small set of genes.</a>

Arguments

expressionPercentileSamplesTwo	The percentile was calculated on the mean of each sample group over all the spots on the array. Provide one or more values. Use comma as a delimter.
min_expression_percentile	Lower bound on expression percentile.
max_expression_percentile	Upper bound on expression percentile.
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

text/xml text/plain

duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.