Find genes whose protein product contains a motif pattern that you specify.<p>
Specify the pattern with a (Perl style) "regular expression". (Regular expressions are more powerful than PROSITE patterns.) For a description of how to create regular expressions, please see the <a href="regexp.jsp">Regular Expression Tutorial</a>. <br><br> The following codes can be used to represent classes of amino acids. <table border columns=3> <TR> <TD><B>AA property</B> </TD> <TD><B>Amino acids</B> </TD> <TD><B>Code</B> </TD> </TR>
<TR> <TD> <B>Acidic</B> </TD> <TD><B>DE</B> </TD> <TD><B>0</B> </TD> </TR> <TR> <TD><B>Alcohol</B> </TD> <TD><B>ST</B> </TD> <TD><B>1</B> </TD> </TR> <TR> <TD><B>Aliphatic</B> </TD> <TD><B>ILV</B> </TD> <TD><B>2</B> </TD> </TR> <TR> <TD><B>Aromatic</B> </TD> <TD><B>FHWY</B> </TD> <TD><B>3</B> </TD> </TR> <TR> <TD><B>Basic</B> </TD> <TD><B>KRH</B> </TD> <TD><B>4</B> </TD> </TR> <TR> <TD><B>Charged</B> </TD> <TD><B>DEHKR</B> </TD> <TD><B>5</B> </TD> </TR> <TR> <TD><B>Hydrophobic</B> </TD> <TD><B>AVILMFYW</B> </TD> <TD><B>6</B> </TD> </TR> <TR> <TD><B>Hydrophilic</B> </TD> <TD><B>KRHDENQ</B> </TD> <TD><B>7</B> </TD> </TR> <TR> <TD><B>Polar</B> </TD> <TD><B>CDEHKNQRST</B> </TD> <TD><B>8</B> </TD> </TR> <TR> <TD><B>Small</B> </TD> <TD><B>ACDGNPSTV</B> </TD> <TD><B>9</B> </TD> </TR> <TR> <TD><B>Tiny</B> </TD> <TD><B>AGS</B> </TD> <TD><B>B</B> </TD> </TR> <TR> <TD><B>Turnlike</B> </TD> <TD><B>ACDEGHKNQRST</B> </TD> <TD><B>Z</B> </TD> </TR> <TR> <TD><B>Any</B> </TD> <TD><b>ACDEFGHIKLM<br> NPQRSTVWY</b> </TD> <TD><B>.</B> </TD> </TR> </table>
motif_organism |
Choose one or more organisms to search with the given motif Provide one or more values. Use comma as a delimter. |
motif_expression |
Enter a Perl regular expression describing the desired motif. Example: 'CC6+RK' searches for two consecutive cysteine residues followed by a stretch of hydrophobic amino acids followed by the aminoacids arginine and lysine. |
o-fields |
Single valued attributes of the feature. Provide one or more values. Use comma as a delimter. |
o-tables |
Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter. |
.convert |
a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and |
.url |
the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server. |
.json |
a logical value controlling whether to use the JSON or the XML version of the method |
text/xml text/plain
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