sagetagbyexpressionlevel: Find SAGE Tags By Expression Level in a given library.

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

<p>Find SAGE Tags By Expression Level in a given library.</p> <p>See the related <a href="showQuestion.do?questionFullName=GeneQuestions.GenesBySageTag"><b>Genes by SAGE Tag Evidence</b></a> query for summing SAGE tag counts within predicted genes. </p>

Arguments

st_min_count	Enter the minimum frequency of the SAGE tags meeting your criteria (raw/normalized). Tags must have this minimum frequency in at least one selected SAGE library.
raw_normalized	Choose normalized or raw data.
sage_experiment	Choose SAGE tag experiment name.
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

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duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.