snpsbyallelefrequency: Find <i>P. falciparum</i> SNPs by the frequency of the minor...

In duncantl/REuPathDB: Interface to REST API of (EuPathDB)

Description

Find <i>P. falciparum</i> SNPs by specifying the frequency of the minor allele and number of strains sequenced at the SNP position.<p> SNP data was provided by <a href="showXmlDataContent.do?name=XmlQuestions.DataSources&datasets=Su_SNPs,Broad_SNPs,sangerItGhanaSnps,sangerReichenowiSnps&title=SNPs%20Summary">Broad, NIH and WTSI</a>.

Arguments

organism	Organism Provide one or more values. Use comma as a delimter.
min_strain_count	Minimum number of strains for which there is a sequence call at this position
minor_allele_min	Lower Bound on the frequency of strains that have the minor allele
minor_allele_max	Upper Bound on the frequency of strains that have the minor allele
o-fields	Single valued attributes of the feature. Provide one or more values. Use comma as a delimter.
o-tables	Multi-valued attributes of the feature. Provide one or more values. Use comma as a delimter.
.convert	a logical value or a function that controls how the result of the method is returned. If this is a function, the character string or raw vector is passed to this function and it converts it appropriately. If this is a logical value and TRUE, then we attempt to convert the result based on its Content-Type returned by the Web server. If this is FALSE, the value from the Web server is returned as is.
.url	the URL for the Web request. This defaults to the correct value, but can be specified by the caller if the method is available at a different URL, e.g. locally or in a mirror server.
.json	a logical value controlling whether to use the JSON or the XML version of the method

Value

text/xml text/plain

duncantl/REuPathDB documentation built on May 15, 2019, 5:28 p.m.