API for hurlab/RichR
Function Enrichment analysis and Network construction
| Global functions | |
|---|---|
| %<>% | Man page |
| %>% | Man page |
| .calculate_Enrichment_Score | Man page Source code |
| .clean.char | Man page Source code |
| .color_scale | Source code |
| .getIdx | Source code |
| .get_go_dat | Source code |
| .get_kg_dat | Source code |
| .get_kgm.data | Source code |
| .getdb | Source code |
| .getdbname | Source code |
| .getmsig | Man page Source code |
| .getrodbname | Source code |
| .getspeices | Source code |
| .kappa | Man page Source code |
| .kappa_cluster_internal | Man page Source code |
| .makeGOdata | Man page Source code |
| .makeKOMdata | Man page Source code |
| .makeKOdata | Man page Source code |
| .makeROdata | Man page Source code |
| .merge_term | Man page Source code |
| .onLoad | Source code |
| .paste.char | Man page Source code |
| Annot-class | Man page |
| Annot-method | Man page |
| GO_child | Man page Source code |
| GSEAResult-class | Man page |
| `$.Annot` | Source code |
| `$.richResult` | Source code |
| `[.Annot` | Source code |
| `[.richResult` | Source code |
| arrange | Man page |
| arrange.Annot | Source code |
| arrange.richResult | Source code |
| as.data.frame.Annot | Source code |
| as.data.frame.GSEAResult | Source code |
| as.data.frame.richResult | Source code |
| buildAnnot | Man page Source code |
| buildMSIGDB | Man page Man page Source code |
| buildOwn | Man page Source code |
| compareGSEA | Man page Source code |
| compareResult | Man page |
| comparedot | Man page |
| detail | Man page Source code |
| detail.GSEAResult | Man page Source code |
| detail.richResult | Man page Source code |
| dim.Annot | Source code |
| dim.richResult | Source code |
| enrich | Man page |
| enrich,ANY,Annot-method | Man page |
| enrich,ANY,data.frame-method | Man page |
| enrich_internal | Man page Source code |
| fast_factor | Source code |
| filter | Man page |
| filter.Annot | Source code |
| filter.richResult | Source code |
| getann | Man page Source code |
| getdetail | Man page Source code |
| ggGSEA | Man page Source code |
| ggbar | Man page |
| ggbar,data.frame-method | Man page |
| ggbar,richResult-method | Man page |
| ggbar_internal | Man page Source code |
| ggdot | Man page |
| ggdot,data.frame-method | Man page |
| ggdot,richResult-method | Man page |
| ggdot_internal | Man page Source code |
| ggheatmap | Man page Source code |
| ggnetmap | Man page Source code |
| ggnetplot | Man page |
| ggnetplot,GSEAResult-method | Man page |
| ggnetplot,data.frame-method | Man page |
| ggnetplot,richResult-method | Man page |
| ggnetwork | Man page |
| ggnetwork,GSEAResult-method | Man page |
| ggnetwork,data.frame-method | Man page |
| ggnetwork,richResult-method | Man page |
| ggnetwork_internal | Man page |
| ggrich_internal | Man page Source code |
| group_by | Man page |
| group_by.Annot | Source code |
| group_by.richResult | Source code |
| head.Annot | Source code |
| head.richResult | Source code |
| hyper_bench_vector | Source code |
| idconvert | Man page Source code |
| msigdbinfo | Man page Source code |
| msigdbr | Man page |
| mutate | Man page |
| mutate.Annot | Source code |
| mutate.richResult | Source code |
| name_table | Source code |
| names.Annot | Source code |
| names.GSEAResult | Source code |
| names.richResult | Source code |
| overlap | Man page Source code |
| plot,GSEAResult-method | Man page |
| plot,richResult-method | Man page |
| plotGSEA | Man page Source code |
| rbind.GSEAResult | Man page Source code |
| rbind.richResult | Man page Source code |
| reexports | Man page |
| rename | Man page |
| rename.Annot | Source code |
| rename.richResult | Source code |
| result | Man page Source code |
| result.GSEAResult | Source code |
| result.richResult | Source code |
| reverseList | Man page Source code |
| richCluster | Man page |
| richCluster,data.frame-method | Man page |
| richCluster,richResult-method | Man page |
| richDAVID | Man page Source code |
| richGO | Man page |
| richGO,ANY,Annot-method | Man page |
| richGO,ANY,data.frame-method | Man page |
| richGO_internal | Man page Source code |
| richGSEA | Man page |
| richGSEA,ANY,Annot-method | Man page |
| richGSEA,ANY,data.frame-method | Man page |
| richGSEA_internal | Man page Source code |
| richKEGG | Man page |
| richKEGG,ANY,Annot-method | Man page |
| richKEGG,ANY,data.frame-method | Man page |
| richKEGG_internal | Man page Source code |
| richLevel | Man page |
| richLevel,ANY,Annot-method | Man page |
| richLevel,ANY,data.frame-method | Man page |
| richLevel_internal | Man page Source code |
| richResult-class | Man page |
| row.names.Annot | Source code |
| row.names.GSEAResult | Source code |
| row.names.richResult | Source code |
| select | Man page |
| select.Annot | Source code |
| select.richResult | Source code |
| sf | Source code |
| show,GSEAResult-method | Man page |
| show,richResult-method | Man page |
| showData | Man page Source code |
| slice | Man page |
| slice.Annot | Source code |
| slice.richResult | Source code |
| summarise | Man page |
| summarise.Annot | Source code |
| summarise.richResult | Source code |
| summary, | Man page |
| summary,GSEAResult-method | Man page |
| summary,richResult-method | Man page |
| summary.GSEAResult | Source code |
| summary.richResult | Source code |
| tail.Annot | Source code |
| tail.richResult | Source code |
| uniq | Source code |
| vec_to_df | Man page Source code |
