FMconfig: List of FINEMAP config file contents for two simulated traits
In jennasimit/flashfm: flexible and shared information fine-mapping
FMconfig R Documentation
List of FINEMAP config file contents for two simulated traits
Description
Simulated data was generated using the mvrnorm function in R and genotype matrix X. The two traits have correlation 0.4 and
each has two causal variants, of which one, rs61839660 is shared between traits; trait 1 has second
causal variant rs62626317 and trait 2 has second causal variant rs11594656. The traits are from a sample
of 2000, with no missing measurements.
Usage
FMconfig
Format
An object of class list of length 2.
Details
FINEMAP (Benner, 2016) was run on each trait. The first list data.frame is the config file contents
for trait 1, and the second list data.frame are those for trait 2.
jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| FMconfig | R Documentation |
List of FINEMAP config file contents for two simulated traits
Description
Simulated data was generated using the mvrnorm function in R and genotype matrix X. The two traits have correlation 0.4 and each has two causal variants, of which one, rs61839660 is shared between traits; trait 1 has second causal variant rs62626317 and trait 2 has second causal variant rs11594656. The traits are from a sample of 2000, with no missing measurements.
Usage
FMconfig
Format
An object of class list of length 2.
Details
FINEMAP (Benner, 2016) was run on each trait. The first list data.frame is the config file contents for trait 1, and the second list data.frame are those for trait 2.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.