makeSNPgroups: Make SNP groups using fine-mapping information from all of...
In jennasimit/flashfm: flexible and shared information fine-mapping
makeSNPgroups R Documentation
Make SNP groups using fine-mapping information from all of the traits
Description
Make SNP groups using fine-mapping information from all of the traits
Usage
makeSNPgroups(main.input, is.snpmat, min.mppi = 0.01, r2.minmerge = 0.5)
Arguments
main.input
output from flashfm.input function
is.snpmat
logical taking value TRUE when genotype matrix is provided and FALSE when covariance matrix is given
min.mppi
trim snp groups with total MPPI < min.mppi in all diseases; default 0.01
r2.minmerge
merge groups with minimum between-group r2 > r2.minmerge; default 0.5
Value
list of SNP groups
jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| makeSNPgroups | R Documentation |
Make SNP groups using fine-mapping information from all of the traits
Description
Make SNP groups using fine-mapping information from all of the traits
Usage
makeSNPgroups(main.input, is.snpmat, min.mppi = 0.01, r2.minmerge = 0.5)
Arguments
main.input |
output from flashfm.input function |
is.snpmat |
logical taking value TRUE when genotype matrix is provided and FALSE when covariance matrix is given |
min.mppi |
trim snp groups with total MPPI < min.mppi in all diseases; default 0.01 |
r2.minmerge |
merge groups with minimum between-group r2 > r2.minmerge; default 0.5 |
Value
list of SNP groups
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.