Description Usage Arguments Value

Make SNP groups using fine-mapping information from all of the traits

1 | ```
makeSNPgroups(main.input, is.snpmat, min.mppi = 0.01, r2.minmerge = 0.5)
``` |

`main.input` |
output from flashfm.input function |

`is.snpmat` |
logical taking value TRUE when genotype matrix is provided and FALSE when covariance matrix is given |

`min.mppi` |
trim snp groups with total MPPI < min.mppi in all diseases; default 0.01 |

`r2.minmerge` |
merge groups with minimum between-group r2 > r2.minmerge; default 0.5 |

list of SNP groups

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