Description Usage Arguments Value Author(s)

internal function for calcAdjPP for the 2-trait case

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`mod1` |
vector of model indices for trait 1 |

`mod2` |
vector of model indices for trait 2 |

`T1` |
index of trait 1 |

`T2` |
index of trait 2 |

`beta` |
list of joint beta estimates for each trait |

`SSy` |
matrix of trait cross-products |

`Sxy` |
matrix with each column being the cross-product between SNPs and a trait |

`xcovo` |
covariance matrix of c("one"=1,X) |

`Mx` |
vector of SNP means |

`Nqq` |
has N[i,j] = no. with both trait i and trait j measured |

`Vres` |
list of variance residuals |

`covY` |
covariance matrix of traits |

`nsnpspermodel` |
list of number of SNPs per model for each model in mod1, mod2 |

lbf12-lbf1-lbf2

Jenn Asimit

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