JAMmain.input: Output from JAMexpanded.multi for two simulated traits
In jennasimit/flashfm: flexible and shared information fine-mapping
JAMmain.input R Documentation
Output from JAMexpanded.multi for two simulated traits
Description
Simulated data was generated using the mvrnorm function in R and genotype matrix X. The two traits have correlation 0.4 and
each has two causal variants, of which one, rs61839660 is shared between traits; trait 1 has second
causal variant rs62626317 and trait 2 has second causal variant rs11594656. The traits are from a sample
of 2000, with no missing measurements.
Usage
JAMmain.input
Format
An object of class list of length 7.
Details
JAMmain.input was generated using the following command, where all called objects exist in the flashfm package,
fstub and fstubJ are paths with file prefixes for output data, and path2plink is the path to the software plink
JAMexpanded.multi(beta,X,snpinfo,ybar,diag(covY),N,chr=10,fstub=fstub,mafthr=0.005,path2plink="/software/plink",r2=0.99,save.path=fstubJ,related=FALSE,y=NULL)
jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.
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| JAMmain.input | R Documentation |
Output from JAMexpanded.multi for two simulated traits
Description
Simulated data was generated using the mvrnorm function in R and genotype matrix X. The two traits have correlation 0.4 and each has two causal variants, of which one, rs61839660 is shared between traits; trait 1 has second causal variant rs62626317 and trait 2 has second causal variant rs11594656. The traits are from a sample of 2000, with no missing measurements.
Usage
JAMmain.input
Format
An object of class list of length 7.
Details
JAMmain.input was generated using the following command, where all called objects exist in the flashfm package, fstub and fstubJ are paths with file prefixes for output data, and path2plink is the path to the software plink JAMexpanded.multi(beta,X,snpinfo,ybar,diag(covY),N,chr=10,fstub=fstub,mafthr=0.005,path2plink="/software/plink",r2=0.99,save.path=fstubJ,related=FALSE,y=NULL)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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