makeplink: Convert genotype score data to plink ped-map format
In jennasimit/flashfm: flexible and shared information fine-mapping
makeplink R Documentation
Convert genotype score data to plink ped-map format
Description
Convert genotype score data to plink ped-map format
Usage
makeplink(Gmat, snpinfo, chr)
Arguments
Gmat
matrix of genotypes scores: SNPs are columns, individuals are rows; could be dosages, which will be rounded
snpinfo
a data.frame with columns: snpid, BP, allele1, allele2; BP is base pair position, allele1 is reference allele
chr
chromosome number
Value
list with two components: ped and map, which are the plink format files
Author(s)
Jenn Asimit
jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.
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| makeplink | R Documentation |
Convert genotype score data to plink ped-map format
Description
Convert genotype score data to plink ped-map format
Usage
makeplink(Gmat, snpinfo, chr)
Arguments
Gmat |
matrix of genotypes scores: SNPs are columns, individuals are rows; could be dosages, which will be rounded |
snpinfo |
a data.frame with columns: snpid, BP, allele1, allele2; BP is base pair position, allele1 is reference allele |
chr |
chromosome number |
Value
list with two components: ped and map, which are the plink format files
Author(s)
Jenn Asimit
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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