calcCres12: covariance between residuals of a pair of models for a trait...

In jennasimit/flashfm: flexible and shared information fine-mapping

covariance between residuals of a pair of models for a trait pair

Description

covariance between residuals of a pair of models for a trait pair

Usage

calcCres12(imod1, imod2, T1, T2, beta, SSy, Sxy, xcovo, Mx, Nqq)

Arguments

imod1	index of model from STR for trait T1, to be called from beta
imod2	index of model from STR for trait T2, to be called from beta
T1	index of first trait
T2	index of second trait
beta	list of joint beta estimates for each trait
SSy	matrix of trait cross-products
Sxy	matrix with each column being the cross-product between SNPs and a trait
xcovo	covariance matrix of c("one"=1,X)
Mx	vector of SNP means
Nqq	has N[i,j] = no. with both trait i and trait j measured

Author(s)

Jenn Asimit

jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.