calcABF: Calculate approximate Bayes' factor (ABF)
In jennasimit/flashfm: flexible and shared information fine-mapping
calcABF R Documentation
Calculate approximate Bayes' factor (ABF)
Description
Calculate approximate Bayes' factor (ABF)
Usage
calcABF(mod, mbeta, SSy, Sxy, Vy, N)
Arguments
mod
joint SNP model with snps separated by "%" e.g. "snp1%snp2"
mbeta
joint effect estimates for SNPs in model given by mod; output from multibeta
SSy
sum(y.squared) for trait y
Sxy
vector of sum(xy) for snp x, trait y
Vy
trait variance
N
sample size
Value
ABF for model mod
Author(s)
Jenn Asimit
jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.
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| calcABF | R Documentation |
Calculate approximate Bayes' factor (ABF)
Description
Calculate approximate Bayes' factor (ABF)
Usage
calcABF(mod, mbeta, SSy, Sxy, Vy, N)
Arguments
mod |
joint SNP model with snps separated by |
mbeta |
joint effect estimates for SNPs in model given by mod; output from multibeta |
SSy |
sum(y.squared) for trait y |
Sxy |
vector of sum(xy) for snp x, trait y |
Vy |
trait variance |
N |
sample size |
Value
ABF for model mod
Author(s)
Jenn Asimit
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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