FMtables: Formats flashfm output to table format

Description Usage Arguments Value Author(s)

View source: R/FMtables.R

Description

Formats flashfm output to table format

Usage

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FMtables(
  PP,
  SW = NULL,
  stepwise = F,
  method = "FineMap",
  regname,
  path.input,
  path.output,
  trait.id,
  trait.names = NULL
)

Arguments

PP

MFM:::MPP.PP.groups.fn output from 'flashfm' in Rdata format.

SW

stepwise list of results from Stepwise model. By def. = NULL

stepwise

TRUE if list of results from sw is provided. By def. = FALSE

method

name of the method used for the FineMap eg: 'FineMap', 'JAM' etc. By def. = FineMap

regname

Region name for table caption

path.input

path where the input files are located.

path.output

path to save the output latex table.

trait.id

id. number if the traits.

trait.names

trait names. If not provided a vector is constructed. 'Trait_1', 'Trait_2', ...

Value

Table results as txt file.

Author(s)

Nico Hernandez


jennasimit/flashfm documentation built on Aug. 9, 2021, 7:36 a.m.