FMtables: Formats flashfm output to table format

In jennasimit/flashfm: flexible and shared information fine-mapping

Formats flashfm output to table format

Description

Formats flashfm output to table format

Usage

FMtables(
  PP,
  SW = NULL,
  stepwise = F,
  method = "FineMap",
  regname,
  path.input,
  path.output,
  trait.id,
  trait.names = NULL
)

Arguments

PP	MFM:::MPP.PP.groups.fn output from 'flashfm' in Rdata format.
SW	stepwise list of results from Stepwise model. By def. = NULL
stepwise	TRUE if list of results from sw is provided. By def. = FALSE
method	name of the method used for the FineMap eg: 'FineMap', 'JAM' etc. By def. = FineMap
regname	Region name for table caption
path.input	path where the input files are located.
path.output	path to save the output latex table.
trait.id	id. number if the traits.
trait.names	trait names. If not provided a vector is constructed. 'Trait_1', 'Trait_2', ...

Value

Table results as txt file.

Author(s)

Nico Hernandez

jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.