API for jennasimit/flashfm
flexible and shared information fine-mapping
| Global functions | |
|---|---|
| .group.intersection | Source code |
| Ctrans | Source code |
| FLASHFMwithFINEMAP | Man page Source code |
| FLASHFMwithJAM | Man page |
| FLASHFMwithJAMhat | Man page |
| FMconfig | Man page |
| FMtables | Man page Source code |
| JAM_PointEstimates | Man page Source code |
| JAM_PointEstimates_Xcov | Man page Source code |
| JAMcormulti.tries | Source code |
| JAMexpanded.multi | Man page Source code |
| JAMexpandedCor.multi | Man page Source code |
| JAMexpandedCor.multi2 | Man page |
| JAMmain.input | Man page |
| LinearizeNestedList | Source code |
| MPPmodGroups | Source code |
| Mlogsum | Source code |
| Mlogsum1 | Source code |
| N | Man page |
| Neff | Man page Source code |
| PPadjOne | Source code |
| PPmodGroups | Source code |
| PPsummarise | Man page |
| SNPprior | Source code |
| Sxy.hat | Man page Source code |
| Vres.all | Man page Source code |
| Vres.hat | Man page Source code |
| Vx.hat | Man page Source code |
| X | Man page |
| [,groups,character,missing,missing-method | Man page |
| [,groups,logical,missing,missing-method | Man page |
| [,groups,numeric,missing,missing-method | Man page |
| [,tags,character,missing,missing-method | Man page |
| [[,groups,character-method | Man page |
| [[,groups,logical-method | Man page |
| [[,groups,numeric-method | Man page |
| allC12 | Man page Source code |
| allcredsets | Man page Source code |
| best.models.cpp | Man page |
| best.snps | Man page Source code |
| beta | Man page |
| calc.maxmin | Man page Source code |
| calcABF | Man page Source code |
| calcAdjPP | Man page Source code |
| calcCres12 | Man page Source code |
| calcD12 | Man page Source code |
| calcDcon | Man page Source code |
| calcDelta | Source code |
| calcDij | Source code |
| calcQ12 | Man page Source code |
| calcQD3 | Source code |
| calcQD4 | Source code |
| calcQD5 | Source code |
| calcQD6fast | Source code |
| calctau | Source code |
| concat | Source code |
| convert | Man page |
| convert,groups-method | Man page |
| convert,tags-method | Man page |
| cor.refdata.fn | Man page Source code |
| cor2cov | Man page |
| covY | Man page |
| credset | Man page Source code |
| cvs | Man page |
| expand.mod | Man page Source code |
| finemap | Man page |
| flashfm | Man page Source code |
| flashfm.input | Man page Source code |
| fm | Man page |
| fm2 | Man page |
| gmodK.fn | Source code |
| group.tags | Source code |
| groupIDs.fn | Man page Source code |
| groupmulti | Man page |
| groups-class | Man page |
| gwas.list | Man page |
| indices | Source code |
| ingroup.fn | Source code |
| logminus | Source code |
| logplus | Source code |
| logsum | Man page Source code |
| make.nonpos.def | Source code |
| makeNlist | Man page Source code |
| makeNlist.rel | Man page Source code |
| makeSNPgroups | Man page Source code |
| makeSNPgroups2 | Man page Source code |
| maked | Source code |
| makemod | Man page Source code |
| makemppi | Source code |
| makeplink | Man page Source code |
| maker | Source code |
| makestr | Source code |
| makex | Source code |
| marg.snps | Man page Source code |
| marg.snps.vecs | Man page Source code |
| marginalpp | Man page Source code |
| mod.fn | Man page Source code |
| multibeta | Man page Source code |
| myr2 | Source code |
| nullfirst | Source code |
| odds_no_sharing | Source code |
| overlap | Man page |
| pairs | Source code |
| ppadjM3 | Source code |
| ppadjM4 | Source code |
| ppadjM5 | Source code |
| ppadjM6 | Source code |
| ppadjT3 | Source code |
| ppadjT4 | Source code |
| ppadjT5 | Source code |
| ppadjT6fast | Source code |
| ppnsnp-class | Man page |
| pre.ppadj | Source code |
| prune_maximal | Man page Source code |
| raf | Man page |
| refdata.fn | Man page Source code |
| sampx | Source code |
| score2alleles | Man page Source code |
| show,groups-method | Man page |
| show,ppnsnp-method | Man page |
| show,snpmod-method | Man page |
| show,snppicker-method | Man page |
| show,tags-method | Man page |
| snpin | Man page |
| snpin,character,groups-method | Man page |
| snpin,character,snppicker-method | Man page |
| snpin,character,tags-method | Man page |
| snpinfo | Man page |
| snpmod-class | Man page |
| snppicker-class | Man page |
| snps | Man page |
| snps,groups-method | Man page |
| snps,tags-method | Man page |
| sparse.cor | Source code |
| summary,groups-method | Man page |
| summary,snppicker-method | Man page |
| summaryStats | Man page Source code |
| tag | Man page Source code |
| tagexpand.mod | Man page |
| taggedby | Man page |
| taggedby,groups,character-method | Man page |
| taggedby,tags,character-method | Man page |
| tags | Man page |
| tags,groups-method | Man page |
| tags,tags-method | Man page |
| tags-class | Man page |
| tagsof | Man page |
| tagsof,groups,character-method | Man page |
| tagsof,tags,character-method | Man page |
| union | Man page |
| union,groups,groups-method | Man page |
| union,snppicker,snppicker-method | Man page |
| union,tags,tags-method | Man page |
| ybar | Man page |
