PPsummarise: Summarise PP and MPP results from single-trait fine-mapping...

In jennasimit/flashfm: flexible and shared information fine-mapping

Summarise PP and MPP results from single-trait fine-mapping and flashfm, by SNP and by SNP group

Description

Summarise PP and MPP results from single-trait fine-mapping and flashfm, by SNP and by SNP group

Usage

PPsummarise(fm.multi, snpGroups, minPP = 0.05)

Arguments

fm.multi	output from flashfm function
snpGroups	list of two sets of snp groups; output from makeSNPgroups2
minPP	a single value such that output for groups consists of group models where PP > minPP for at least one set of fine-mapping results; default is 0.05

Value

a list of 4 objects: MPP lists trait-specific PP of SNP inclusion in a model; MPPg lists trait-specific PP of SNP group inclusion in a model; PP lists trait-specific model PP; PPg lists trait-specific model PP in terms of SNP group

Author(s)

Jenn Asimit

jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.