Description Usage Arguments Value Author(s)

Thin genotype matrix for JAM input

1 | ```
refdata.fn(X, r2 = 0.99)
``` |

`X` |
matrix of genotypes scores: SNPs are columns, individuals are rows; could be dosages |

`r2` |
r.squared threshold for thinning SNPs |

genotype matrix of SNPs thinned at r2 and with colinearity removed

Jenn Asimit

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