X: Simulated genotype matrix used to generate two traits
In jennasimit/flashfm: flexible and shared information fine-mapping
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Simulated genotype matrix used to generate two traits
Description
The matrix is 2000 x 334, where rows are individuals and columns are SNP rsIDs.
For a region of 345 SNPs in chromosme 10p-6030000-6220000 (GRCh37/hg19), containing IL2RA,
we generated a population of 100,000 individuals based on the CEU 1000 Genomes Phase 3 data
using HapGen2. We selected a random sample of 2000 from this population and only retained
the 334 variants with MAF > 0.005 in this sample.
Usage
X
Format
An object of class matrix with 2000 rows and 334 columns.
jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.
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| X | R Documentation |
Simulated genotype matrix used to generate two traits
Description
The matrix is 2000 x 334, where rows are individuals and columns are SNP rsIDs. For a region of 345 SNPs in chromosme 10p-6030000-6220000 (GRCh37/hg19), containing IL2RA, we generated a population of 100,000 individuals based on the CEU 1000 Genomes Phase 3 data using HapGen2. We selected a random sample of 2000 from this population and only retained the 334 variants with MAF > 0.005 in this sample.
Usage
X
Format
An object of class matrix with 2000 rows and 334 columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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