X: Simulated genotype matrix used to generate two traits

Description Usage Format

Description

The matrix is 2000 x 334, where rows are individuals and columns are SNP rsIDs. For a region of 345 SNPs in chromosme 10p-6030000-6220000 (GRCh37/hg19), containing IL2RA, we generated a population of 100,000 individuals based on the CEU 1000 Genomes Phase 3 data using HapGen2. We selected a random sample of 2000 from this population and only retained the 334 variants with MAF > 0.005 in this sample.

Usage

1
X

Format

An object of class matrix with 2000 rows and 334 columns.


jennasimit/flashfm documentation built on Aug. 9, 2021, 7:36 a.m.