summaryStats: Summary statistics needed for flashfm input

In jennasimit/flashfm: flexible and shared information fine-mapping

Summary statistics needed for flashfm input

Description

Summary statistics needed for flashfm input

Usage

summaryStats(Xmat = TRUE, ybar.all, main.input)

Arguments

Xmat	logical, TRUE if main.input is based on genotype matrix (reference or from sample); FALSE if main.input based on covariance matrix
ybar.all	vector of trait means
main.input	output from flashfm.input

Value

list of 4 components: Mx = mean of SNPs, xcovo = covariance matrix of SNPs including column and row of 0s for intercept term, Sxy = matrix of Sxy values (column traits), ybar=vector of trait means

Author(s)

Jenn Asimit

jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.