raf: Vector of RAFs from the simulated genotype matrix X used to...
In jennasimit/flashfm: flexible and shared information fine-mapping
raf R Documentation
Vector of RAFs from the simulated genotype matrix X used to generate two traits
Description
This is a named vector of length 334, where names are SNP rsIDs.
For a region of 345 SNPs in chromosme 10p-6030000-6220000 (GRCh37/hg19), containing IL2RA,
we generated a population of 100,000 individuals based on the CEU 1000 Genomes Phase 3 data
using HapGen2. We selected a random sample of 2000 from this population and only retained
the 334 variants with MAF > 0.005 in this sample.
Usage
raf
Format
An object of class numeric of length 328.
jennasimit/flashfm documentation built on July 31, 2022, 7:32 p.m.
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| raf | R Documentation |
Vector of RAFs from the simulated genotype matrix X used to generate two traits
Description
This is a named vector of length 334, where names are SNP rsIDs. For a region of 345 SNPs in chromosme 10p-6030000-6220000 (GRCh37/hg19), containing IL2RA, we generated a population of 100,000 individuals based on the CEU 1000 Genomes Phase 3 data using HapGen2. We selected a random sample of 2000 from this population and only retained the 334 variants with MAF > 0.005 in this sample.
Usage
raf
Format
An object of class numeric of length 328.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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